!pip install 'setuptools==58.0.0'
!pip install suds-jurko
!pip install gseapy
Collecting setuptools==58.0.0
Downloading setuptools-58.0.0-py3-none-any.whl (816 kB)
|████████████████████████████████| 816 kB 10.0 MB/s
Installing collected packages: setuptools
Attempting uninstall: setuptools
Found existing installation: setuptools 58.1.0
Uninstalling setuptools-58.1.0:
Successfully uninstalled setuptools-58.1.0
Successfully installed setuptools-58.0.0
Collecting suds-jurko
Downloading suds-jurko-0.6.zip (255 kB)
|████████████████████████████████| 255 kB 11.1 MB/s
Building wheels for collected packages: suds-jurko
Building wheel for suds-jurko (setup.py) ... done
Created wheel for suds-jurko: filename=suds_jurko-0.6-py3-none-any.whl size=375624 sha256=60067473b37e371738f0a96f7a773f8db038fc66b07506ae6a50d02d2bbffc3f
Stored in directory: /root/.cache/pip/wheels/f4/75/2a/54353e9cd47f7dd7861856a750c5f99f05da1ccf624100b7a5
Successfully built suds-jurko
Installing collected packages: suds-jurko
Successfully installed suds-jurko-0.6
Collecting gseapy
Downloading gseapy-0.10.5-py3-none-any.whl (525 kB)
|████████████████████████████████| 525 kB 20.4 MB/s
Requirement already satisfied: matplotlib in /shared-libs/python3.7/py/lib/python3.7/site-packages (from gseapy) (3.4.3)
Requirement already satisfied: joblib in /shared-libs/python3.7/py/lib/python3.7/site-packages (from gseapy) (1.0.1)
Requirement already satisfied: scipy in /shared-libs/python3.7/py/lib/python3.7/site-packages (from gseapy) (1.7.1)
Collecting bioservices
Downloading bioservices-1.8.1.tar.gz (199 kB)
|████████████████████████████████| 199 kB 46.4 MB/s
Requirement already satisfied: pandas in /shared-libs/python3.7/py/lib/python3.7/site-packages (from gseapy) (1.2.5)
Requirement already satisfied: numpy>=1.13.0 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from gseapy) (1.19.5)
Requirement already satisfied: requests in /shared-libs/python3.7/py/lib/python3.7/site-packages (from gseapy) (2.26.0)
Collecting grequests
Downloading grequests-0.6.0-py3-none-any.whl (5.2 kB)
Collecting requests_cache
Downloading requests_cache-0.8.1-py3-none-any.whl (44 kB)
|████████████████████████████████| 44 kB 4.0 MB/s
Collecting easydev>=0.9.36
Downloading easydev-0.12.0.tar.gz (47 kB)
|████████████████████████████████| 47 kB 7.8 MB/s
Collecting beautifulsoup4
Downloading beautifulsoup4-4.10.0-py3-none-any.whl (97 kB)
|████████████████████████████████| 97 kB 13.1 MB/s
Collecting xmltodict
Downloading xmltodict-0.12.0-py2.py3-none-any.whl (9.2 kB)
Requirement already satisfied: lxml in /shared-libs/python3.7/py/lib/python3.7/site-packages (from bioservices->gseapy) (4.6.3)
Requirement already satisfied: suds-jurko in /root/venv/lib/python3.7/site-packages (from bioservices->gseapy) (0.6)
Collecting appdirs
Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Requirement already satisfied: wrapt in /shared-libs/python3.7/py/lib/python3.7/site-packages (from bioservices->gseapy) (1.12.1)
Collecting colorlog
Downloading colorlog-6.4.1-py2.py3-none-any.whl (11 kB)
Collecting colorama
Downloading colorama-0.4.4-py2.py3-none-any.whl (16 kB)
Requirement already satisfied: pexpect in /shared-libs/python3.7/py-core/lib/python3.7/site-packages (from easydev>=0.9.36->bioservices->gseapy) (4.8.0)
Collecting soupsieve>1.2
Downloading soupsieve-2.2.1-py3-none-any.whl (33 kB)
Collecting gevent
Downloading gevent-21.8.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (5.8 MB)
|████████████████████████████████| 5.8 MB 8.3 MB/s
Requirement already satisfied: greenlet<2.0,>=1.1.0 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from gevent->grequests->bioservices->gseapy) (1.1.2)
Collecting zope.event
Downloading zope.event-4.5.0-py2.py3-none-any.whl (6.8 kB)
Requirement already satisfied: setuptools in /root/venv/lib/python3.7/site-packages (from gevent->grequests->bioservices->gseapy) (58.0.0)
Requirement already satisfied: zope.interface in /shared-libs/python3.7/py/lib/python3.7/site-packages (from gevent->grequests->bioservices->gseapy) (5.4.0)
Requirement already satisfied: pyparsing>=2.2.1 in /shared-libs/python3.7/py-core/lib/python3.7/site-packages (from matplotlib->gseapy) (2.4.7)
Requirement already satisfied: kiwisolver>=1.0.1 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from matplotlib->gseapy) (1.3.2)
Requirement already satisfied: pillow>=6.2.0 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from matplotlib->gseapy) (8.3.2)
Requirement already satisfied: python-dateutil>=2.7 in /shared-libs/python3.7/py-core/lib/python3.7/site-packages (from matplotlib->gseapy) (2.8.2)
Requirement already satisfied: cycler>=0.10 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from matplotlib->gseapy) (0.10.0)
Requirement already satisfied: six in /shared-libs/python3.7/py-core/lib/python3.7/site-packages (from cycler>=0.10->matplotlib->gseapy) (1.16.0)
Requirement already satisfied: pytz>=2017.3 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from pandas->gseapy) (2021.3)
Requirement already satisfied: ptyprocess>=0.5 in /shared-libs/python3.7/py-core/lib/python3.7/site-packages (from pexpect->easydev>=0.9.36->bioservices->gseapy) (0.7.0)
Requirement already satisfied: charset-normalizer~=2.0.0 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from requests->gseapy) (2.0.6)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from requests->gseapy) (1.26.7)
Requirement already satisfied: certifi>=2017.4.17 in /shared-libs/python3.7/py/lib/python3.7/site-packages (from requests->gseapy) (2021.5.30)
Requirement already satisfied: idna<4,>=2.5 in /shared-libs/python3.7/py-core/lib/python3.7/site-packages (from requests->gseapy) (3.2)
Requirement already satisfied: attrs<22.0,>=21.2 in /shared-libs/python3.7/py-core/lib/python3.7/site-packages (from requests_cache->bioservices->gseapy) (21.2.0)
Collecting cattrs<2.0,>=1.8
Downloading cattrs-1.8.0-py3-none-any.whl (24 kB)
Collecting url-normalize<2.0,>=1.4
Downloading url_normalize-1.4.3-py2.py3-none-any.whl (6.8 kB)
Building wheels for collected packages: bioservices, easydev
Building wheel for bioservices (setup.py) ... done
Created wheel for bioservices: filename=bioservices-1.8.1-py3-none-any.whl size=229863 sha256=607d986876d9328cef83eecd5ea0dc6f52905d1c37332ed583e36337697be5b2
Stored in directory: /root/.cache/pip/wheels/f7/54/e9/a7bf159efa0c5883ffaa9934525d90bf602d8f20290c2e4a33
Building wheel for easydev (setup.py) ... done
Created wheel for easydev: filename=easydev-0.12.0-py3-none-any.whl size=64232 sha256=71c00628f80f050a5af677d7d2b3f71c5bae64a8aff1d034117ffa5a63c380de
Stored in directory: /root/.cache/pip/wheels/82/ab/83/fdfc4017ea44a585b6754752cc5f63f2d0d63fcc1317e7174b
Successfully built bioservices easydev
Installing collected packages: zope.event, url-normalize, soupsieve, gevent, colorlog, colorama, cattrs, appdirs, xmltodict, requests-cache, grequests, easydev, beautifulsoup4, bioservices, gseapy
Successfully installed appdirs-1.4.4 beautifulsoup4-4.10.0 bioservices-1.8.1 cattrs-1.8.0 colorama-0.4.4 colorlog-6.4.1 easydev-0.12.0 gevent-21.8.0 grequests-0.6.0 gseapy-0.10.5 requests-cache-0.8.1 soupsieve-2.2.1 url-normalize-1.4.3 xmltodict-0.12.0 zope.event-4.5.0
import gseapy as gp
Creating directory /root/.config/bioservices